PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_20585g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 351aa    MW: 37814.7 Da    PI: 5.1402
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_20585g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-13154196754
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+++N++++ Lr+++Pk       K++ a+iL  AveY+k+L
  MA_20585g0010 154 MAERRRRKKLNDRLFMLRSVVPKV-----SKMDRASILGDAVEYLKEL 196
                    79*********************6.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-16145210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.377147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-14153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-11153196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.45E-13154200No hitNo description
Gene3DG3DSA:4.10.280.102.1E-15154207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.13E-6265317No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEMAWTGLLD ESFSSIRAML DGGGGDYDFY STMDANGGTL EALLGPSLMC PDASVLSNVG  60
GSIDTFHDLG CSITTSADTL EGPEGSDDMG LLQRRAGIEP GFHKNGSDEK PNGVVGEREA  120
DAANAANNNN NNGCAKAASV GRGRKNGLPA KNLMAERRRR KKLNDRLFML RSVVPKVSKM  180
DRASILGDAV EYLKELLQRI NDLHAELISS SYNSNSLAPI LPDFTCRMNQ EYQASPLNPE  240
VEPARVEVRT REGKALNIHM FCSKKPGLLL STVRALDGLG LDVKQAVISC LNGFALDVFE  300
AEKSMGKDVT GEEIKALLLH TADQNPWDSH GGICFSKGLL IYKEQAFPSS G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155162ERRRRKKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1226871e-169BT122687.1 Picea sitchensis clone WS0454_C09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844542.13e-77PREDICTED: transcription factor ICE1
SwissprotQ9LPW31e-73SCRM2_ARATH; Transcription factor SCREAM2
STRINGGSMUA_Achr6P08070_0019e-78(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-74bHLH family protein